|
adjustEntriesToBudget()
|
adjustEntriesToBudget function |
|
calcDerivedParms()
|
calcDerivedParms function |
|
calculateBudget()
|
calculateBudget function |
|
calculateChkReps()
|
calculateChkReps function |
|
checkAddRemove()
|
checkAddRemove function |
|
dataframePhenoRec()
|
dataframePhenoRec replaces framePhenoRec function post-burn in |
|
elementWise()
|
elementWise function |
|
fillPipeline()
|
fillPipeline function |
|
framePhenoRec()
|
framePhenoRec function |
|
gebvPhenoEval()
|
Predict the GEBV of all genotyped individuals |
|
genomicMateSelCrit()
|
Generate predictions of cross means or usefulness as genomic mate selection criteria |
|
getParmsResponse()
|
getParmsResponse function |
|
grmPhenoEval()
|
grmPhenoEval function |
|
idx1()
|
idx1 function |
|
iidPhenoEval()
|
iidPhenoEval function |
|
initFuncADChk()
|
initFuncADChk function |
|
initFuncSimp()
|
initFuncSimp function |
|
initializeScheme()
|
initializeScheme function |
|
insertRow()
|
insertRow function |
|
ip
|
packages installed at the machine |
|
lastCycStgOut()
|
lastCycStgOut function |
|
makeGRM()
|
makeGRM function |
|
make_grm()
|
Function to make genomic relation matrices |
|
mean_records()
|
mean_records function |
|
optContrib()
|
optContrib function |
|
optimizeByLOESS()
|
optimizeByLOESS function |
|
parentSelCritBLUP()
|
Generate BLUPs as phenotype-only parent selection criteria |
|
parentSelCritGEBV()
|
Generate GEBV as genomic parent selection criteria |
|
phenoRecFromPop()
|
phenoRecFromPop function |
|
plotRecords()
|
plotRecords function |
|
popImprov1Cyc()
|
popImprov1Cyc function |
|
popImprov2Cyc()
|
popImprov2Cyc function |
|
popImprovByMateSel()
|
Run population improvement using mate selection |
|
popImprovByParentSel()
|
Run population improvement using parent selection |
|
prodPipeFncChk()
|
prodPipeFncChk function |
|
productPipeline()
|
productPipeline function |
|
productPipelinePostBurnIn()
|
productPipeline function for when a new bsp object has been supplied |
|
productSelCritBLUP()
|
productSelCritBLUP function |
|
readControlFile()
|
function to read a text control file |
|
removeOldestCyc()
|
removeOldestCyc function |
|
repeatSim()
|
repeatSim function |
|
returnNonDom()
|
returnNonDom function |
|
runBreedingScheme()
|
runBreedingScheme function |
|
runOneRep()
|
runOneRep function |
|
sampleEntryNumbers()
|
sampleEntryNumbers function |
|
selCritGRM()
|
selCritGRM function |
|
selCritIID()
|
selCritIID function |
|
specifyBSP()
|
specifyBSP function |
|
specifyCosts()
|
specifyCosts function |
|
specifyPipeline()
|
specifyPipeline function |
|
specifyPopulation()
|
specifyPopulation function |
|
stageOutputs()
|
stageOutputs function |
|
testDom()
|
testDom function |
|
tidyrecords()
|
tidyrecords function |
|
tidysims()
|
tidysims function |
|
whereIsID()
|
whereIsID function |