Generate GEBV as genomic parent selection criteria

parentSelCritGEBV will compute GEBV of all genotyped individuals using all available phenotypes. Parents are selected by these criteria e.g. by the popImprov1Cyc populationImprovement function

parentSelCritGEBV(records, candidates, trainingpop, bsp, SP)

Arguments

records	The breeding program records object. See fillPipeline for details
candidates	Character vector of ids of the candidates to be parents, not necessarily phenotyped but must be predicted
trainingpop	chr. vector of ids with phenotypes , but not necessarily in the list of selection candidates, but who should be included in the grm / training model.
bsp	The breeding scheme parameter list
SP	The AlphaSimR SimParam object (needed to pull SNPs)

Value

Character vector of the ids of the selected individuals

Details

Setting up to distinguish between parent and cross selection and additive and non-additive predictions. Uses genomicMateSelectR functions, which will need to be installed for these to work.

Modified original selCritGRM function. Uses alternative functions make_grm and gebvPhenoEval.

Accesses all individuals in records to pick the highest ones

Examples