Predict the GEBV of all genotyped individuals

Function to predict the GEBV of all genotyped individuals in the population using all available phenotypes. Takes a data.frame coming from framePhenoRec and an additive kinship matrix (GRM) and analyze them with individuals . Uses mmer to implement a genomic BLUP model.

gebvPhenoEval(phenoDF, grm)

Arguments

phenoDF	A data.frame of phenotypic observations. See framePhenoRec for details
grm	A genomic relationship matrix

Value

Named real vector of the BLUPs of all individuals in phenoDF (names are the individual ids), with appropriate weights by error variance of the observation

Details

Given all the phenotypic records calculate the GEBV for each individual using all its records