Prediction functions

Predict cross variances

Functions for predicting genetic variances

predCrossVarA()

Single trait prediction of the additive genetic variance in a one cross

predCrossVarAD()

Single trait prediction of the additive _and_ dominance genetic variance in a one cross

predCrossVarsA()

Multi-trait, multi-cross prediction of one additive genetic variance (or covariance) among full-siblings.

predCrossVarsAD()

Multi-trait, multi-cross prediction of one additive _and_ one dominance genetic variance (or covariance) among full-siblings.

predOneCrossVarA()

Multi-trait prediction of one additive genetic variance (or covariance) among full-siblings.

predOneCrossVarAD()

Multi-trait prediction of one additive _and_ one dominance genetic variance (or covariance) among full-siblings.

runCrossVarPredsA()

Single-trait prediction of the additive genetic variance for multiple crosses

runCrossVarPredsAD()

Single-trait prediction of the additive _and_ dominance genetic variance for multiple crosses

runMtCrossVarPredsA()

Multi-trait, multi-cross prediction of additive genetic variance and covariances among full-siblings.

runMtCrossVarPredsAD()

Multi-trait, multi-cross prediction of additive _and_ dominance genetic variances _and_ covariances among full-siblings.

Predict cross means

Functions for predicting genetic means

predCrossMeanBVs()

predCrossMeanBVs

predCrossMeanBVsOneTrait()

predCrossMeanBVsOneTrait

predCrossMeanGVsOneTrait()

predCrossMeanGVsOneTrait

predCrossMeanTGVs()

predCrossMeanTGVs

The rest

Utility / helper Functions

backsolveSNPeff()

backsolveSNPeff

calcGameticLD()

calcGameticLD

centerDosage()

centerDosage

crosses2predict()

crosses2predict

dose2domDev()

dose2domDev

dose2domDevGenotypic()

dose2domDevGenotypic

effectsArray2list()

effectsArray2list

genmap2recombfreq()

genmap2recombfreq

genoVarCovarMatFunc()

genoVarCovarMatFunc

genomicVarA_m1()

genomicVarA_m1

genomicVarD_m1()

genomicVarD_m1

getAF()

getAF

getM2varcomp()

getM2varcomp

getMAF()

getMAF

getMultiTraitPMVs_A()

getMultiTraitPMVs_A

getMultiTraitPMVs_AD()

getMultiTraitPMVs_AD

getPropHom()

getPropHom

hello()

Hello, World!

intensity()

intensity

kinship()

kinship function

maf_filter()

maf_filter

makeKinship()

makeKinship function

posteriorMeanVarCovarA()

posteriorMeanVarCovarA

posteriorMeanVarCovarAD()

posteriorMeanVarCovarAD

remove_invariant()

remove_invariant