Compute standard genomic variance term, what Lehermeier called Method 1 or "M1". LD is not accounted for. SNP effects are assumed _i.i.d._.

genomicVarD_m1(snpVarD, freq)

Arguments

snpVarD

vector of _dominance_ SNP effects estimate. Ideally vector is named with SNP IDs and matches the order of related SNP matrices.

freq

vector of allele frequencies. Must be in same order as snp effects

Value

additive genomic variance component