function to create a additive or dominance kinship matrix from a AlphaSimR pop-class object. A wrapper for the kinship() function.
makeKinship(pop, SP, type, snpsORqtl = "snps")
pop | pop-class object from AlphaSimR |
---|---|
SP | simulation parameters from AlphaSimR |
type | string, "add" or "dom". type="add" gives same as rrBLUP::A.mat(), i.e. Van Raden, Method 1. type="dom" gives classical parameterization according to Vitezica et al. 2013. |
snpsORqtl | string, "snps" (default) or "qtl". Determines which loci are used to compute the GRM. |
K<-makeKinship(pop, SP, type="add")#> Error in pullSnpGeno(pop = pop, simParam = SP): could not find function "pullSnpGeno"