Compute standard genomic variance term, what Lehermeier called Method 1 or "M1". LD is not accounted for. SNP effects are assumed _i.i.d._.
genomicVarA_m1(snpVarA, freq)
| snpVarA | vector of _additive_ SNP effects estimate. Ideally vector is named with SNP IDs and matches the order of related SNP matrices. |
|---|---|
| freq | vector of allele frequencies. Must be in same order as snp effects |
additive genomic variance component