Compute the per-individual proportion homozygous

Compute the per-individual proportion homozygous. For example, to use as a predictor for a directional dominance model.

getPropHom(M)

Arguments

M

dosage matrix. Assumes SNPs in M coded 0, 1, 2 (requires rounding dosages to integers). M is Nind x Mrow, numeric matrix, with row/columanes to indicate SNP/ind ID

Value

vector of per-individual proportion homozygous

See also

Other helper: backsolveSNPeff(), centerDosage(), crosses2predict(), dose2domDevGenotypic(), dose2domDev(), effectsArray2list(), genmap2recombfreq(), genoVarCovarMatFunc(), getAF(), getMAF(), intensity(), kinship(), maf_filter(), quadform(), remove_invariant()