Restructure BLUPs for downstream analysis

NOT CURRENTLY IN USE / PROBABLY DEPRECATED

nestForMultiTrialAnalysis(curatedTrialData)

Arguments

curatedTrialData

Value

Details

Actually expects input to be BLUPs from single-trial mixed-models. Fits mixed-models across trials and removes outliers. Returns de-regressed BLUPs and more.

NOTICE: This function is part of a family of functions ("cassavabase_pheno_pipeline") developed as part of the NextGen Cassava Breeding Project genomic selection pipeline. For some examples of their useage:

• IITA_2021GS (should be first use of this package)

• NRCRI_2021GS

• TARI_2020GS

• IITA_2020GS

See also

Other cassavabase_pheno_pipeline: calcPropMissing(), curateTrialOneTrait(), curateTrialsByTrait(), detectExptDesigns(), fitMultiTrialModel(), makeTrialTypeVar(), nestByTrials(), nestDesignsDetectedByTraits(), nestTrialsByTrait(), readDBdata(), renameAndSelectCols()