Last updated: 2021-10-24

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Knit directory: BreedingSchemeOpt/

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Unstaged changes:
    Modified:   analysis/AlphaSimHlpR_firstSteps.Rmd
    Modified:   analysis/baselineSim.Rmd
    Modified:   analysis/genomicMateSelSims.Rmd

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File	Version	Author	Date	Message
html	e0d20bd	wolfemd	2021-08-27	Build site.
Rmd	9d369ee	wolfemd	2021-08-27	Publish burnInSims with the toy example completed and the full analysis almost ready to run.
html	e210a1f	wolfemd	2021-08-19	Build site.
Rmd	5914d8d	wolfemd	2021-08-19	Publish initial sims towards a baseline set of sims using runBreedingScheme_wBurnIn
Rmd	0ebe65f	wolfemd	2021-08-13	test
Rmd	c2e379e	wolfemd	2021-08-13	Rebuild repo removing the “Group” part. Project is to contain BOTH the “Group” and a separate section just for the actual simulation analyses.
html	5395509	wolfemd	2021-04-22	Build site.
html	92bd15b	wolfemd	2021-04-22	Build site.
html	1d503b6	wolfemd	2021-04-22	Build site.
Rmd	bf9f68c	wolfemd	2021-04-22	Publish the workflowr workflow itself.
html	fe3048a	wolfemd	2021-04-22	Build site.
Rmd	9df9d9b	wolfemd	2021-04-22	Publish the initial files for the Breeding Scheme Optimization Group project
Rmd	32a7aff	wolfemd	2021-04-22	Start workflowr project.

Breeding Scheme Opt Group

Group Objectives

Participants learn about the usage of empirically-parameterized simulations for decision making about optimal breeding schemes.
Generate recommendations to NGC and stakeholders regarding key breeding scheme-related questions.

2021

Meeting 1 - 2021-Mar-12

Meeting 2 - 2021-Apr-02

Meeting 3 - 2021-Apr-23

AlphaSimHlpR first steps: Installation and quickly running the AlphaSimHlpR tutorial example.

Reducing error with new tools: Run a simple example simulation of the effect of reducing error with new tools. The first part, which currently is where my progress terminated, was to try and initiate a simulation and burn-in under phenotypic selection for several cycles before switching to genomic selection. Spoiler alert: Still needs work.

Creating this workflowR page for the group:

Meeting 4 - 2021-Jul-02

Meeting Slides: Concept for empirically estimating selection error described.

NextGen Breeding Scheme Optimization